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	<title>Francesco Rao</title>
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		<title>Francesco Rao</title>
		<link>http://ruvido.wordpress.com</link>
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		<title>Francesco Rao Research Lab</title>
		<link>http://ruvido.wordpress.com/2011/06/18/francesco-rao-lab-page/</link>
		<comments>http://ruvido.wordpress.com/2011/06/18/francesco-rao-lab-page/#comments</comments>
		<pubDate>Sat, 18 Jun 2011 13:56:52 +0000</pubDate>
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				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/?p=43</guid>
		<description><![CDATA[We have a new homepage! Go here, to get in touch with our research, publications, people and software development!<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=43&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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			<media:title type="html">Francesco Rao Research Lab</media:title>
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		<title>Pynoramix is released!</title>
		<link>http://ruvido.wordpress.com/2011/06/17/pynoramix/</link>
		<comments>http://ruvido.wordpress.com/2011/06/17/pynoramix/#comments</comments>
		<pubDate>Fri, 17 Jun 2011 14:01:16 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
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		<guid isPermaLink="false">http://ruvido.wordpress.com/?p=47</guid>
		<description><![CDATA[PYNORAMIX is a software to analyze molecular dynamics trajectories of water. It offers a python-based framework to investigate water structure and dynamics, using complex network analysis. A sample result is found here. Go to github to get the latest release!<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=47&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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			<media:title type="html">Pynoramix - Water Structure and Dynamics</media:title>
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		<title>Twitter from the terminal</title>
		<link>http://ruvido.wordpress.com/2008/06/03/twitter-from-the-terminal/</link>
		<comments>http://ruvido.wordpress.com/2008/06/03/twitter-from-the-terminal/#comments</comments>
		<pubDate>Tue, 03 Jun 2008 14:27:46 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[Uncategorized]]></category>
		<category><![CDATA[geek]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/?p=38</guid>
		<description><![CDATA[This is huge. Send Twitter text from your burning terminal. For doing this, use curl: #!/bin/bash if [ "$1" == "" ]; then echo " twitter message missing!" exit fi USER=XXX PASSWD=YYY message=$* curl -u $USER:$PASSWD -d status="$message" http://twitter.com/statuses/update.xml &#62; /dev/null If you don&#8217;t have curl just type in ubuntu: sudo aptitude install curl and [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=38&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<title>Power-law random generator</title>
		<link>http://ruvido.wordpress.com/2008/06/02/power-law-random-generator/</link>
		<comments>http://ruvido.wordpress.com/2008/06/02/power-law-random-generator/#comments</comments>
		<pubDate>Mon, 02 Jun 2008 15:39:59 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/?p=37</guid>
		<description><![CDATA[So you want to generate random numbers distributed along a power-law, uh? Suppose your target distribution is: you will use: where x is a random variable distributed uniformly and n&#62;1. This formula comes from the differential equality: which becomes: in case x is distributed uniformly. For example, suppose you want to generate numbers which are [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=37&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<title>G80 Architecture</title>
		<link>http://ruvido.wordpress.com/2008/02/11/g80-architecture/</link>
		<comments>http://ruvido.wordpress.com/2008/02/11/g80-architecture/#comments</comments>
		<pubDate>Mon, 11 Feb 2008 14:13:58 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/?p=34</guid>
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		<title>Cell-cycle in short</title>
		<link>http://ruvido.wordpress.com/2008/02/07/cell-cycle-in-short/</link>
		<comments>http://ruvido.wordpress.com/2008/02/07/cell-cycle-in-short/#comments</comments>
		<pubDate>Thu, 07 Feb 2008 09:30:37 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[biology]]></category>
		<category><![CDATA[cdks]]></category>
		<category><![CDATA[cell_cycle]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/?p=31</guid>
		<description><![CDATA[[This article is based on the Cell cycle wikipedia entry] The cell cycle is the series of events that take place in a eukaryotic cell leading to its replication. These events can be divided in two periods: interphase (I) where the cell grows, accumulating nutrients needed for mitosis and duplicating its DNA and the mitotic [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=31&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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			<media:title type="html">cell-cycle</media:title>
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		<title>Ligand Unbing Art</title>
		<link>http://ruvido.wordpress.com/2008/02/06/ligand-unbing-art/</link>
		<comments>http://ruvido.wordpress.com/2008/02/06/ligand-unbing-art/#comments</comments>
		<pubDate>Wed, 06 Feb 2008 15:26:43 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[Uncategorized]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/2008/02/06/ligand-unbing-art/</guid>
		<description><![CDATA[<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=30&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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			<media:title type="html">ligand unbinding</media:title>
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		<title>Instantaneously generation of random numbers</title>
		<link>http://ruvido.wordpress.com/2008/02/05/instantaneously-generation-of-random-numbers/</link>
		<comments>http://ruvido.wordpress.com/2008/02/05/instantaneously-generation-of-random-numbers/#comments</comments>
		<pubDate>Tue, 05 Feb 2008 15:07:43 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[bash]]></category>
		<category><![CDATA[geek]]></category>
		<category><![CDATA[scripting]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/2008/02/05/instantaneously-generation-of-random-numbers/</guid>
		<description><![CDATA[#! /bin/bash coff=1.2 nnce=765 cent=cl_$coff.centers seed=`date +'%N'` awk 'BEGIN{ srand("'$seed'") print int(rand()) }'<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=28&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<title>Trajectory overlay with VMD</title>
		<link>http://ruvido.wordpress.com/2008/01/29/trajectory-overlay-with-vmd/</link>
		<comments>http://ruvido.wordpress.com/2008/01/29/trajectory-overlay-with-vmd/#comments</comments>
		<pubDate>Tue, 29 Jan 2008 09:33:02 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[clusterization]]></category>
		<category><![CDATA[geek]]></category>
		<category><![CDATA[vmd]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/?p=25</guid>
		<description><![CDATA[In Molecular Dynamics, especially when small fluctuations are involved, it can be helpful to display the snapshots contained in a trajectory all at once instead of viewing a movie. The same utility can be used, for example, to display the members of a structural cluster (you can generate clusters of structures using wordom). This feature [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=25&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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		<slash:comments>1</slash:comments>
	
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			<media:title type="html">Vmd Overlay</media:title>
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		<item>
		<title>Wordom: a program for efficient analysis of molecular dynamics simulations</title>
		<link>http://ruvido.wordpress.com/2007/08/27/wordom-a-program-for-efficient-analysis-of-molecular-dynamics-simulations/</link>
		<comments>http://ruvido.wordpress.com/2007/08/27/wordom-a-program-for-efficient-analysis-of-molecular-dynamics-simulations/#comments</comments>
		<pubDate>Mon, 27 Aug 2007 17:38:51 +0000</pubDate>
		<dc:creator>ruvido</dc:creator>
				<category><![CDATA[geek]]></category>
		<category><![CDATA[papers]]></category>

		<guid isPermaLink="false">http://ruvido.wordpress.com/2007/08/16/wordom-a-program-for-efficient-analysis-of-molecular-dynamics-simulations/</guid>
		<description><![CDATA[Seeber M, Cecchini M, Rao F, Settanni G, and Caflisch A. Bioinf. (2007) doi:10.1093/bioinformatics/btm378<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=ruvido.wordpress.com&amp;blog=615431&amp;post=17&amp;subd=ruvido&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
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